Bioinformatician | Data Scientist | Proteomics & Genomics Scientist

I consider myself both collaborative and adaptable. I am always eager to take on new and diverse projects. I am very enthusiastic about sharing and continuously developing my data visualization skills as a means to enhance scientific communication. I am an open-minded person and enjoy fostering strong relationships with my colleagues.

PhD Candidate in Quantitative Proteomics

JGU University

Mainz, Germany

Current - 2018

• PhD thesis: Quantitative Mass Spectrometry-based Proteomics to Investigate RNA-protein Interactions

M.Sc. in Omics Data Analysis

University of Vic

Barcelona, Spain

2017 - 2016

• Master thesis: Soring function for finding Lolium Perenne DEGs
• Erasmus + grant fellow

B.Sc. in Biochemestry

University of Barcelona

Barcelona, Spain

2016 - 2009

• Bachelor thesis: NMR studies on alpha-synuclein
• Erasmus + grant fellow

Postdoctoral Researcher

Friedrich Loeffler Institute

Greifswald, Germany

Current - 2023

• Postdoctoral researcher with Dr. Falk Butter (Falk.Butter@fli.de)
• Publications: 1 first-author paper (in preparation), 1 co-author paper (in preparation)

PhD Candidate

Institute of Molecular Biology

Mainz, Germany

2023 - 2018

• PhD candidate with Dr. Falk Butter (Falk.Butter@fli.de)
• Publications: 1 first-author paper, 6 co-author papers

Master Student

Institute of Biological, Environmental and Rural Sciences

Aberystwyth, UK

2017

• MSc student with Dr. Narcis Fernandez-Fuentes (naf4@aber.ac.uk)
• Publications: 1 first-authtor paper, 1 co-author paper

Network-based Assignment of RNA-Binding Proteins’ Functionality

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• Functionality was inferred from associations with annotations at the domain, molecular function, and pathway levels.
• Function-based networks were created from quantitative proteomics data and made accessible through an interactive, user-friendly web interface.
• Keywords: Network | Functional analysis | Pfam | GO | KEGG | R Shiny

Infectome Profiling of Three Leishmania Species

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• M. musculus proteome changes were investigated after infection with Leishmania.
• Protein orthologs between the Leishmania species were established.
• Keywords: Proteome | Differential expression | Protein orthology

Embryonic Development Proteome Profiling of Xenopus Species

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• Clustering (Self Organizing Maps) and dimensionality reduction techniques (Principal Component Analysis) were applied.
• Keywords: Proteome | Differential expression | SOM | PCA | Clustering

Scoring Function for RNA-Seq Differential Expression Assessment

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• A scoring function was developed around three RNA-Seq differential expression assessment R packages (DESeq2, edgeR, limma+voom)
• Keywords: NGS | RNA-Seq | Quality control | Differential expression

ChIP-Seq Characterization of a Novel ATPase in T. brucei

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• H2A.Z deposition was investigated and visualized with genome tracks
• Keywords: NGS | ChIP-Seq | Genome tracks

Immunoprecipitation of RNA-binding Proteins in S. cerevisiae

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• I was responsible for designing the experimental setup and generating the data for the RNA-binding protein interactome investigation.
• Keywords: Yeast | Protein Immunoprecipitation | Experimental design

Mass Spectrometry Quantitative Proteomics

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• I used chemical labeling (DML) and label-free mass spectrometry sample preparation protocols on several projects
• Keyword: Mass spectrometry | DML | LFQ | In-gel digestion

Articles with Genomics Analysis

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• 2022 | PLoS Pathogens | https://doi.org/10.1371/journal.ppat.1010514
• 2021 | Nature Comunications | https://doi.org/10.1038/s41467-021-22861-2
• 2021 | PLoS One | https://doi.org/10.1371/journal.pone.0249636
• 2019 | PLoS One | https://doi.org/10.1371/journal.pone.0220518

Articles with Proteomics Analysis

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• 2023 | Nucleic Acid Research | https://doi.org/10.1093/nar/gkad245
• 2023 | iScience | https://doi.org/10.1016/j.isci.2023.106778
• 2023 | PLoS Pathogens | https://doi.org/10.1371/journal.ppat.1011486
• 2021 | Journal of Cell Science | https://doi.org/10.1242/jcs.254300
• 2020 | RNA | https://doi.org/10.1261/rna.076281.120

Conferences

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• 2022 | Statistical data analysis for genome-scale biology | Flash talk
• 2021 | Network biology | Plenary talk
• 2019 | FEBS advanced course | Poster presentation

Courses

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• 2022 | Data visualization for scientists
• 2021 | Scientific writing
• 2020 | Convincing scientific presentations
• 2020 | Regression Models | Coursera certificate
• 2020 | Statistical Inference | Coursera certificate